org.gcube.data.spd.obisplugin
Class ObisClient

java.lang.Object
  org.gcube.data.spd.obisplugin.ObisClient

public class ObisClient
extends Object

Author:

"Federico De Faveri defaveri@isti.cnr.it"

Field Summary

protected static SimpleDateFormat	DATE_FORMAT
protected static DateUtil	DATE_UTIL
protected static org.gcube.common.core.utils.logging.GCUBELog	logger

Constructor Summary

ObisClient()

Method Summary

protected static void	fillCommonNames(PluginSession session, int taxonNameId, org.gcube.data.spd.plugin.fwk.model.ResultItem item)
protected static void	fillCommonNames(PluginSession session, int taxonNameId, org.gcube.data.spd.plugin.fwk.model.TaxonomyItem item)
protected static int	fillDatasetInformation(ResultSet rs, org.gcube.data.spd.plugin.fwk.model.ResultItem item)
protected static void	fillProducts(PluginSession session, int speciesId, int datasetId, SearchFilters filters, org.gcube.data.spd.plugin.fwk.model.ResultItem item)
protected static void	fillTaxon(PluginSession session, int id, org.gcube.data.spd.plugin.fwk.model.Taxon taxon) Fills the node with the taxon information.
protected static void	fillTaxonomyItem(PluginSession session, int id, org.gcube.data.spd.plugin.fwk.model.TaxonomyItem item)
protected static void	generateRecords(PluginSession session, ResultSet rs, SearchFilters filters, Writer<org.gcube.data.spd.plugin.fwk.model.ResultItem> writer)
static org.gcube.data.spd.plugin.fwk.model.BasisOfRecord	getBasisOfRecord(String basis)
protected static List<org.gcube.data.spd.plugin.fwk.model.TaxonomyItem>	getChildrenTaxon(PluginSession session, int id)
static Set<String>	getCommonNames(PluginSession session, String scientificName)
static org.gcube.data.spd.plugin.fwk.model.OccurrencePoint	getOccurrenceById(PluginSession session, String id)
protected static org.gcube.data.spd.plugin.fwk.model.OccurrencePoint	getOccurrencePoint(ResultSet rs)
static void	getOccurrences(PluginSession session, String key, Writer<org.gcube.data.spd.plugin.fwk.model.OccurrencePoint> writer)
static int	getOccurrencesCount(PluginSession session, int taxonId, int datasetId, SearchFilters filters)
static Set<String>	getScientificNames(PluginSession session, String commonName)
static void	getTaxonByCommonName(PluginSession session, String commonName, Writer<org.gcube.data.spd.plugin.fwk.model.TaxonomyItem> writer)
protected static org.gcube.data.spd.plugin.fwk.model.TaxonomyItem	getTaxonById(PluginSession session, int id)
static void	getTaxonByScientificNames(PluginSession session, String scientificName, Writer<org.gcube.data.spd.plugin.fwk.model.TaxonomyItem> writer)
static void	main(String[] args)
protected static void	navigate(String indentation, PluginSession session, int id)
static void	searchByCommonName(PluginSession session, String searchTerm, SearchFilters filters, Writer<org.gcube.data.spd.plugin.fwk.model.ResultItem> writer)
static void	searchByScientificName(PluginSession session, String searchTerm, SearchFilters filters, Writer<org.gcube.data.spd.plugin.fwk.model.ResultItem> writer)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

protected static org.gcube.common.core.utils.logging.GCUBELog logger

DATE_FORMAT

protected static final SimpleDateFormat DATE_FORMAT

DATE_UTIL

protected static final DateUtil DATE_UTIL

Constructor Detail

ObisClient

public ObisClient()

Method Detail

getOccurrencesCount

public static int getOccurrencesCount(PluginSession session,
                                      int taxonId,
                                      int datasetId,
                                      SearchFilters filters)
                               throws SQLException

Throws:

SQLException

getOccurrences

public static void getOccurrences(PluginSession session,
                                  String key,
                                  Writer<org.gcube.data.spd.plugin.fwk.model.OccurrencePoint> writer)
                           throws Exception

Throws:

Exception

getOccurrencePoint

protected static org.gcube.data.spd.plugin.fwk.model.OccurrencePoint getOccurrencePoint(ResultSet rs)
                                                                                 throws SQLException

Throws:

SQLException

getOccurrenceById

public static org.gcube.data.spd.plugin.fwk.model.OccurrencePoint getOccurrenceById(PluginSession session,
                                                                                    String id)
                                                                             throws Exception

Throws:

Exception

getBasisOfRecord

public static org.gcube.data.spd.plugin.fwk.model.BasisOfRecord getBasisOfRecord(String basis)

searchByCommonName

public static void searchByCommonName(PluginSession session,
                                      String searchTerm,
                                      SearchFilters filters,
                                      Writer<org.gcube.data.spd.plugin.fwk.model.ResultItem> writer)
                               throws Exception

Throws:

Exception

fillProducts

protected static void fillProducts(PluginSession session,
                                   int speciesId,
                                   int datasetId,
                                   SearchFilters filters,
                                   org.gcube.data.spd.plugin.fwk.model.ResultItem item)
                            throws SQLException

Throws:

SQLException

searchByScientificName

public static void searchByScientificName(PluginSession session,
                                          String searchTerm,
                                          SearchFilters filters,
                                          Writer<org.gcube.data.spd.plugin.fwk.model.ResultItem> writer)
                                   throws Exception

Throws:

Exception

generateRecords

protected static void generateRecords(PluginSession session,
                                      ResultSet rs,
                                      SearchFilters filters,
                                      Writer<org.gcube.data.spd.plugin.fwk.model.ResultItem> writer)
                               throws Exception

Throws:

Exception

fillTaxon

protected static void fillTaxon(PluginSession session,
                                int id,
                                org.gcube.data.spd.plugin.fwk.model.Taxon taxon)
                         throws SQLException

Fills the node with the taxon information. Also information about parent are retrieved.

Parameters:

connection - the db connection.

id - the taxon id.

taxonNode - the node to fill.

Throws:

SQLException

fillTaxonomyItem

protected static void fillTaxonomyItem(PluginSession session,
                                       int id,
                                       org.gcube.data.spd.plugin.fwk.model.TaxonomyItem item)
                                throws SQLException

Throws:

SQLException

fillCommonNames

protected static void fillCommonNames(PluginSession session,
                                      int taxonNameId,
                                      org.gcube.data.spd.plugin.fwk.model.TaxonomyItem item)
                               throws SQLException

Throws:

SQLException

fillCommonNames

protected static void fillCommonNames(PluginSession session,
                                      int taxonNameId,
                                      org.gcube.data.spd.plugin.fwk.model.ResultItem item)
                               throws SQLException

Throws:

SQLException

fillDatasetInformation

protected static int fillDatasetInformation(ResultSet rs,
                                            org.gcube.data.spd.plugin.fwk.model.ResultItem item)
                                     throws SQLException

Throws:

SQLException

getCommonNames

public static Set<String> getCommonNames(PluginSession session,
                                         String scientificName)
                                  throws SQLException

Throws:

SQLException

getScientificNames

public static Set<String> getScientificNames(PluginSession session,
                                             String commonName)
                                      throws SQLException

Throws:

SQLException

getTaxonByScientificNames

public static void getTaxonByScientificNames(PluginSession session,
                                             String scientificName,
                                             Writer<org.gcube.data.spd.plugin.fwk.model.TaxonomyItem> writer)
                                      throws SQLException

Throws:

SQLException

getTaxonByCommonName

public static void getTaxonByCommonName(PluginSession session,
                                        String commonName,
                                        Writer<org.gcube.data.spd.plugin.fwk.model.TaxonomyItem> writer)
                                 throws SQLException

Throws:

SQLException

getChildrenTaxon

protected static List<org.gcube.data.spd.plugin.fwk.model.TaxonomyItem> getChildrenTaxon(PluginSession session,
                                                                                         int id)
                                                                                  throws SQLException

Throws:

SQLException

getTaxonById

protected static org.gcube.data.spd.plugin.fwk.model.TaxonomyItem getTaxonById(PluginSession session,
                                                                               int id)
                                                                        throws SQLException

Throws:

SQLException

main

public static void main(String[] args)
                 throws Exception

Parameters:

args -

Throws:

Exception

navigate

protected static void navigate(String indentation,
                               PluginSession session,
                               int id)
                        throws SQLException

Throws:

SQLException