org.gcube.dataanalysis.executor.nodes.transducers.bionym.abstracts
Class GenericWorkflow

java.lang.Object
  org.gcube.dataanalysis.executor.nodes.transducers.bionym.abstracts.GenericWorkflow

Direct Known Subclasses:

BiOnymWF

public abstract class GenericWorkflow
extends Object

Field Summary

protected HashMap<String,String>	globalparameters
protected List<Matcher>	matchersList
protected Parser	parser
protected PostProcessor	postprocessor
protected String	sandboxFolder

Constructor Summary

GenericWorkflow(String sandboxFolder, HashMap<String,String> globalparameters)

Method Summary

MatcherOutput	executeChainedWorkflow(List<String> rawentries)
void	init(HashMap<String,String> globalparameters)
protected abstract MatcherOutput	mergeOutputs(List<MatcherOutput> outslist)
void	resetMatchers(List<Matcher> newmatchers)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

globalparameters

protected HashMap<String,String> globalparameters

sandboxFolder

protected String sandboxFolder

parser

protected Parser parser

matchersList

protected List<Matcher> matchersList

postprocessor

protected PostProcessor postprocessor

Constructor Detail

GenericWorkflow

public GenericWorkflow(String sandboxFolder,
                       HashMap<String,String> globalparameters)

Method Detail

init

public void init(HashMap<String,String> globalparameters)

mergeOutputs

protected abstract MatcherOutput mergeOutputs(List<MatcherOutput> outslist)

executeChainedWorkflow

public MatcherOutput executeChainedWorkflow(List<String> rawentries)
                                     throws Exception

Throws:

Exception

resetMatchers

public void resetMatchers(List<Matcher> newmatchers)