Uses of Class
org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration

Packages that use AlgorithmConfiguration

org.gcube.dataanalysis.ecoengine.clustering
org.gcube.dataanalysis.ecoengine.configuration
org.gcube.dataanalysis.ecoengine.evaluation
org.gcube.dataanalysis.ecoengine.interfaces
org.gcube.dataanalysis.ecoengine.modeling
org.gcube.dataanalysis.ecoengine.models
org.gcube.dataanalysis.ecoengine.models.cores.pca
org.gcube.dataanalysis.ecoengine.processing
org.gcube.dataanalysis.ecoengine.processing.factories
org.gcube.dataanalysis.ecoengine.spatialdistributions
org.gcube.dataanalysis.ecoengine.test
org.gcube.dataanalysis.ecoengine.test.regressions
org.gcube.dataanalysis.ecoengine.user
org.gcube.dataanalysis.ecoengine.utils

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.clustering

Methods in org.gcube.dataanalysis.ecoengine.clustering with parameters of type AlgorithmConfiguration

void	DBScan.setConfiguration(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.configuration

Methods in org.gcube.dataanalysis.ecoengine.configuration with parameters of type AlgorithmConfiguration

static org.hibernate.SessionFactory

AlgorithmConfiguration.getConnectionFromConfig(AlgorithmConfiguration Input)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.evaluation

Methods in org.gcube.dataanalysis.ecoengine.evaluation with parameters of type AlgorithmConfiguration

HashMap<String,String>	DistributionQualityAnalysis.analyze(AlgorithmConfiguration config)
HashMap<String,String>	DiscrepancyAnalysis.analyze(AlgorithmConfiguration config)
HashMap<String,String>	HabitatRepresentativeness.analyze(AlgorithmConfiguration config)
void	DistributionQualityAnalysis.init(AlgorithmConfiguration config)
void	DiscrepancyAnalysis.init(AlgorithmConfiguration config)
void	HabitatRepresentativeness.init(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.interfaces

Methods in org.gcube.dataanalysis.ecoengine.interfaces with parameters of type AlgorithmConfiguration

abstract HashMap<String,String>	DataAnalysis.analyze(AlgorithmConfiguration config) Executed the core of the algorithm
abstract void	DataAnalysis.init(AlgorithmConfiguration config) initializes the procedure e.g.
void	Evaluator.init(AlgorithmConfiguration config)
void	SpatialProbabilityDistributionGeneric.init(AlgorithmConfiguration config)
void	Model.init(AlgorithmConfiguration Input, Model previousModel)
void	SpatialProbabilityDistributionTable.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
abstract void	SpatialProbabilityDistributionNode.initSingleNode(AlgorithmConfiguration config)
void	Modeler.model(AlgorithmConfiguration Input)
void	Modeler.model(AlgorithmConfiguration Input, Model previousModel)
void	Model.postprocess(AlgorithmConfiguration Input, Model previousModel)
StatisticalType	DataAnalysis.process(AlgorithmConfiguration config) Processing skeleton : init-analyze-end
StatisticalType	Evaluator.process(AlgorithmConfiguration config)
void	Clusterer.setConfiguration(AlgorithmConfiguration config)
void	Generator.setConfiguration(AlgorithmConfiguration config)
abstract void	SpatialProbabilityDistributionNode.setup(AlgorithmConfiguration config)
void	Model.train(AlgorithmConfiguration Input, Model previousModel)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.modeling

Methods in org.gcube.dataanalysis.ecoengine.modeling with parameters of type AlgorithmConfiguration

void	SimpleModeler.model(AlgorithmConfiguration Input)
void	SimpleModeler.model(AlgorithmConfiguration Input, Model previousModel)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.models

Methods in org.gcube.dataanalysis.ecoengine.models with parameters of type AlgorithmConfiguration

void	ModelAquamapsNN.init(AlgorithmConfiguration Input, Model previousModel)
void	ModelAquamapsNNNS.init(AlgorithmConfiguration Input, Model previousModel)
void	ModelHSPEN.init(AlgorithmConfiguration setup, Model previousModel)
void	ModelAquamapsNN.postprocess(AlgorithmConfiguration Input, Model previousModel)
void	ModelAquamapsNNNS.postprocess(AlgorithmConfiguration Input, Model previousModel)
void	ModelHSPEN.postprocess(AlgorithmConfiguration Input, Model previousModel)
void	ModelAquamapsNN.train(AlgorithmConfiguration Input, Model previousModel)
void	ModelAquamapsNNNS.train(AlgorithmConfiguration Input, Model previousModel)
void	ModelHSPEN.train(AlgorithmConfiguration Input, Model previousModel)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.models.cores.pca

Methods in org.gcube.dataanalysis.ecoengine.models.cores.pca with parameters of type AlgorithmConfiguration

void	PrincipalComponentAnalysis.init(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.processing

Methods in org.gcube.dataanalysis.ecoengine.processing with parameters of type AlgorithmConfiguration

void	RainyCloudGenerator.setConfiguration(AlgorithmConfiguration config)
void	LocalSplitGenerator.setConfiguration(AlgorithmConfiguration config)
void	LocalSimpleSplitGenerator.setConfiguration(AlgorithmConfiguration config)

Constructors in org.gcube.dataanalysis.ecoengine.processing with parameters of type AlgorithmConfiguration

LocalSplitGenerator(AlgorithmConfiguration config)

RainyCloudGenerator(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.processing.factories

Methods in org.gcube.dataanalysis.ecoengine.processing.factories with parameters of type AlgorithmConfiguration

static Evaluator	EvaluatorsFactory.getEvaluator(AlgorithmConfiguration config)
static List<Evaluator>	EvaluatorsFactory.getEvaluators(AlgorithmConfiguration config)
static Generator	GeneratorsFactory.getGenerator(AlgorithmConfiguration config)
static List<Generator>	GeneratorsFactory.getGenerators(AlgorithmConfiguration config)
static Modeler	ModelersFactory.getModeler(AlgorithmConfiguration config)
static List<Modeler>	ModelersFactory.getModelers(AlgorithmConfiguration config)
static Object	ProcessorsFactory.getProcessor(AlgorithmConfiguration config, String file)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.spatialdistributions

Methods in org.gcube.dataanalysis.ecoengine.spatialdistributions with parameters of type AlgorithmConfiguration

void	DummyAlgorithm.init(AlgorithmConfiguration config)
void	TestAlgorithm.init(AlgorithmConfiguration config)
void	AquamapsNative2050.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsSuitable.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsSuitable2050.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsNNNS.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsNN.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsNNSuitable.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test

Constructors in org.gcube.dataanalysis.ecoengine.test with parameters of type AlgorithmConfiguration

TablesComparison(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.regressions

Constructors in org.gcube.dataanalysis.ecoengine.test.regressions with parameters of type AlgorithmConfiguration

TestEvaluation.ThreadCalculator(Evaluator dg, AlgorithmConfiguration config)

TestsHSPENTraining.ThreadCalculator(Modeler dg, AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.user

Methods in org.gcube.dataanalysis.ecoengine.user that return AlgorithmConfiguration

static AlgorithmConfiguration	EvaluatorT.getDiscrepancyConfiguration(String operationName, String firstTable, String secondTable, String firstTableCsquareColumn, String secondTableCsquareColumn, String firstTableProbabilityColumn, String secondTableProbabilityColumn, String comparisonThreshold, String configPath)
static AlgorithmConfiguration	EvaluatorT.getEvaluationConfiguration(String configPath, String operationName, String positiveCasesTable, String negativeCasesTable, String positiveCasesTableKeyColumn, String negativeCasesKeyColumn, String finalDistributionTable, String finalDistributionTableKeyColumn, String finalDistributionTableProbabilityColumn, String positiveThreshold, String negativeThreshold)
static AlgorithmConfiguration	GeneratorT.getGenerationConfig(int numberOfResources, String algorithmName, String envelopeTable, String preprocessedTable, String speciesName, String userName, String csquareTable, String finalDistributionTable, String configPath)
static AlgorithmConfiguration	ModelerT.getTrainingConfig(String modelName, String absenceTable, String presenceTable, String speciesCode, String userName, String layersNeurons, String configPath)
static AlgorithmConfiguration	ModelerT.getTrainingConfigHSPEN(String modelName, String outputTable, String occurrenceCells, String hspenOrigin, String hcaf, String configPath)

Methods in org.gcube.dataanalysis.ecoengine.user with parameters of type AlgorithmConfiguration

static void	EvaluatorT.evaluate(AlgorithmConfiguration config)
static void	GeneratorT.generate(AlgorithmConfiguration config)
static void	ModelerT.train(AlgorithmConfiguration config)

Constructors in org.gcube.dataanalysis.ecoengine.user with parameters of type AlgorithmConfiguration

EvaluatorT(Evaluator dg, AlgorithmConfiguration config)

ModelerT(Modeler dg, AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.utils

Methods in org.gcube.dataanalysis.ecoengine.utils with parameters of type AlgorithmConfiguration

void	TrainingSetsGenerator.generate(AlgorithmConfiguration config)
void	TrainingSetsGenerator.init(AlgorithmConfiguration config)
static org.hibernate.SessionFactory	DatabaseUtils.initDBSession(AlgorithmConfiguration config)

Constructors in org.gcube.dataanalysis.ecoengine.utils with parameters of type AlgorithmConfiguration

HspecDiscrepanciesCalculator(AlgorithmConfiguration config)

TablesDiscrepanciesCalculator(AlgorithmConfiguration config)