A B C D E F G H I L M N O P R S T U W

A

AccuracyCalc(CategoryGuesser, String, String, String, int, String, String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

AccuracyCalc(LexicalEngineConfiguration, CategoryGuesser, String, String, String, int, String, String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

addAttribute(String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Entry

addCategory(Category) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryOrderedList

addEdge(V, V) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomListenableDirectedWeightedGraph

addEdge(String, String, double) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

addType(String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Entry

addVertex(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

B

BenchMarkTest1 - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTest1() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest1

BenchMarkTest2 - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTest2() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest2

BenchMarkTest3 - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTest3() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest3

BenchMarkTest4 - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTest4() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest4

BenchMarkTest5 - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTest5() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest5

BenchMarkTestExternalCfg - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTestExternalCfg() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTestExternalCfg

BenchMarkTestFilterCategory - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTestFilterCategory() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTestFilterCategory

BenchMarkTestSingleton - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTestSingleton() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTestSingleton

BenchMarkTestTSCountry - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTestTSCountry() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTestTSCountry

BenchMarkTrainingSet - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTrainingSet() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTrainingSet

BenchMarkTrainingSetScientificName - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

BenchMarkTrainingSetScientificName() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTrainingSetScientificName

bestCategories - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

bestColumns - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

bestScores - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

buildCategories(SessionFactory, String, String, String, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

buildCategoriesStructure(SessionFactory, String, String, String, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

buildRelationsEdges(SessionFactory) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

buildWholeStructure(SessionFactory, String, String, String, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

C

calcLike(CategoryOrderedList, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

calcLikeThread(CategoryOrderedList, String, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

calculateCategoriesWeights(SessionFactory) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

calculateCoverage() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

calculateNumberOfCycles() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

calculateNumberOfElements() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

calculateNumberOfElements() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ReferenceChunkSet

calculateNumberOfElements() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.SingletonChunkSet

calculateNumberOfElements() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunkSet

calculateRelationWeights(SessionFactory) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

calculateTotalEntries(SessionFactory, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

categories - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

categories - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

Category - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

Category(String, String, String, String) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

categoryDiscardDifferencialThreshold - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

categoryDiscardThreshold - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

CategoryGuesser - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.run

CategoryGuesser() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

CategoryOrderedList - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

CategoryOrderedList(LexicalEngineConfiguration) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryOrderedList

CategoryScores - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

CategoryScores(BigInteger, LexicalEngineConfiguration) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

CategoryScoresOld - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

CategoryScoresOld(BigInteger) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScoresOld

CD(boolean, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.utils.DistanceCalculator

CD(boolean, String, String, boolean, boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.utils.DistanceCalculator

CheckCompleteResult(String, String, String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

CheckFamilyResult(String, String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

checkInput(String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.FileTools

checkOutput(String, boolean) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.FileTools

Chunk - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks

Chunk(Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.Chunk

chunk2Index(int, int) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.MathFunctions

chunkIndex - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

ChunkSet - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks

ChunkSet(int, int, String, String, LexicalEngineConfiguration, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

ChunkSet(int, int, String, String, BigInteger, LexicalEngineConfiguration, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

chunkSetSize - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

chunkSize - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

chunkSize - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

columnFilter - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

compareToReferenceChunk(HashMap<String, CategoryScores>, ReferenceChunk) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunk

compareToReferenceChunk(HashMap<String, CategoryScores>, ReferenceChunk, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunk

config - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

configure(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

configure(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

configureByStream(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

createTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

CustomListenableDirectedWeightedGraph<V,E> - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph

CustomListenableDirectedWeightedGraph(Class) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomListenableDirectedWeightedGraph

CustomWeightedEdge - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph

CustomWeightedEdge() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedEdge

CustomWeightedVertex - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph

CustomWeightedVertex(String, double) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedVertex

CustomWeightedVertex(String) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedVertex

D

databaseAutomaticTestTable - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

databaseDialect - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

databaseDriver - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

DatabaseFactory - Class in org.gcube.dataanalysis.lexicalmatcher.utils

DatabaseFactory() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.utils.DatabaseFactory

databaseIdleConnectionTestPeriod - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

databasePassword - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

databaseURL - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

databaseUserName - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

DataTypeRecognizer - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.core

DataTypeRecognizer() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.core.DataTypeRecognizer

DBObjectTranslator - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

DBObjectTranslator() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

description - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

DistanceCalculator - Class in org.gcube.dataanalysis.lexicalmatcher.utils

DistanceCalculator() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.utils.DistanceCalculator

E

Engine - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.core

Engine(LexicalEngineConfiguration, String) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

engine - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.Chunk

engine - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

EngineConfiguration - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.core

EngineConfiguration() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

Entry - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

Entry() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Entry

entryAcceptanceThreshold - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

equals(CustomWeightedVertex) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedVertex

Example1_Species - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.examples

Example1_Species() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example1_Species

Example2_Area - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.examples

Example2_Area() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example2_Area

Example3_SingleMatchShark - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.examples

Example3_SingleMatchShark() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example3_SingleMatchShark

Example4_SingleMatchMitella - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.examples

Example4_SingleMatchMitella() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example4_SingleMatchMitella

Example5_SingleMatchMitella - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.examples

Example5_SingleMatchMitella() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example5_SingleMatchMitella

ExampleGuesser - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test

ExampleGuesser() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.ExampleGuesser

ExampleGuessingExternalCfg - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.examples

ExampleGuessingExternalCfg() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.ExampleGuessingExternalCfg

ExampleLexicalMatcher - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test

ExampleLexicalMatcher() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.ExampleLexicalMatcher

executeHQLQuery(String, SessionFactory, boolean) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.DatabaseFactory

executeHQLUpdate(String, SessionFactory, boolean) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.DatabaseFactory

executeSQLQuery(String, SessionFactory) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.DatabaseFactory

executeSQLUpdate(String, SessionFactory) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.DatabaseFactory

F

FileTools - Class in org.gcube.dataanalysis.lexicalmatcher.utils

FileTools() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.utils.FileTools

findBest() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

findBest() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScoresOld

findBestList() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

findBestList() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScoresOld

G

generateChunkSet() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

generateGraph() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

generateNovelList() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryOrderedList

generatePosition(int, int) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

generateRandomGraph() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

generateRandoms(int, int, int) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.MathFunctions

generateSequence(int) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.MathFunctions

generateUpTo5StarGraph() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

getAttributes() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Entry

getCachePath() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getCategories() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getCategoriesTree(SessionFactory) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.TreeExtractor

getCategory(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryOrderedList

getCategory() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

getCategoryDiscardDifferencialThreshold() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getCategoryDiscardThreshold() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getCategoryElements() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

getCategoryFrom() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

getCategoryFrom() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

getCategoryfromIndex(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

getCategoryName() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ReferenceChunk

getCategoryTo() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

getCategoryTo() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

getChunkSize() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getChunkSize() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

getClassification() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

getClassificationOLD() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

getClassificationPlain() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

getColumn() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

getColumnType() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunk

getConfigPath() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getCsquareCode() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getDatabaseAutomaticTestTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getDatabaseAutomaticTestTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getDatabaseDialect() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getDatabaseDialect() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getDatabaseDriver() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getDatabaseDriver() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getDatabaseIdleConnectionTestPeriod() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getDatabaseIdleConnectionTestPeriod() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getDatabasePassword() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getDatabasePassword() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getDatabaseURL() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getDatabaseURL() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getDatabaseUserName() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getDatabaseUserName() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getDBSession() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

getDBSession(LexicalEngineConfiguration) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

getDescription() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getDescription() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

getDescription() - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

getDetailedMatches() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

getDetailedResults() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunk

getDetailedSingletonEntry() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

getDistributionTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getEntryAcceptanceThreshold() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getFamilyID() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

getFrom() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

getFrom() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

getGeneralProperties() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getHcafTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getHspenTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getIdColumn() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getIndex() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

getIndex() - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

getLastResults() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

getLogger() - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.LexicalLogger

getMaxminLatTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getName() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

getName() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

getName() - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

getName() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

getNameHuman() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getNextChunkSet() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.SetOfReferenceChunkSet

getNumberOfElements() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

getNumberOfElements() - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

getNumberOfEntries() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

getNumberOfThreads() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getNumberOfThreadsToUse() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getOccurrenceCellsTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getOrderedList() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryOrderedList

getOriginHspenTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getReferenceChunksToTake() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getReferenceColumn() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getReferenceEntries() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ReferenceChunk

getReferenceTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getRemoteCalculator() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getRemoteEnvironment() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getScore(String, boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

getScore(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

getScore(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScoresOld

getScore() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

getScoresTable() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryOrderedList

getSeriesColumn() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

getSeriesName() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

getServiceUserName() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getSimpleScore(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

getSingleEntryRecognitionMaxDeviation() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getSingletonElement() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

getSingletonEntry() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunk

getSingletonMatches() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

getSpeciesID() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getStringScore() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

getTableName() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

getTablename() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

getTableName() - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

getTableStore() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

getTimeSeriesChunksToTake() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

getTo() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

getTo() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

getTypes() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Entry

getWeigth() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

getWeigth() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

getWriteSummaryLog() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

go() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphFramer

GraphDisplayer - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph

GraphDisplayer() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

graphDisplayer - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphFramer

GraphFramer - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph

GraphFramer(String) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphFramer

GraphGeneratorApplet - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph

GraphGeneratorApplet() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphGeneratorApplet

guessType(String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.DataTypeRecognizer

guessType(ArrayList<String>) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.DataTypeRecognizer

guessType(ArrayList<String>, boolean) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.DataTypeRecognizer

H

HandleEvent(Event) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphFramer

HEIGHT - Static variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

HEIGHTBOX - Static variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

I

idColumn - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

incrementAvg(double, double, int) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.MathFunctions

incrementPerc(float, float, int) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.MathFunctions

incrementScore(String, float, boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

incrementScore(String, float) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScoresOld

init() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

init() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphGeneratorApplet

init(String, String, LexicalEngineConfiguration) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

init(String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

init(LexicalEngineConfiguration) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

init() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

initDBConnection(String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.DatabaseFactory

initDBConnection(String, LexicalEngineConfiguration) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.DatabaseFactory

initSingleMatcher(LexicalEngineConfiguration, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

isNativeGeneration() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

isRandomTake() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

isSingleton() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunk

isType2050() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

isUseSimpleDistance() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

L

LD(String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.utils.DistanceCalculator

LexicalEngineConfiguration - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.core

LexicalEngineConfiguration() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

LexicalLogger - Class in org.gcube.dataanalysis.lexicalmatcher.utils

LexicalLogger() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.utils.LexicalLogger

loadString(String, String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.FileTools

M

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.DataTypeRecognizer

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example1_Species

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example2_Area

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example3_SingleMatchShark

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example4_SingleMatchMitella

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.Example5_SingleMatchMitella

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.examples.ExampleGuessingExternalCfg

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.TSObjectTransformer

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.TreeExtractor

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.StarGraphExtraction

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.ExampleGuesser

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.ExampleLexicalMatcher

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest1

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest2

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest3

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest4

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTest5

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTestExternalCfg

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTestFilterCategory

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTestSingleton

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTestTSCountry

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTrainingSet

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.BenchMarkTrainingSetScientificName

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.TestExternalCfgProduction

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.TestSingleExternalCfgProduction

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.TestExternalCfgProduction

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.test.TestSingleExternalCfgProduction

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.DistanceCalculator

main(String[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.MathFunctions

MathFunctions - Class in org.gcube.dataanalysis.lexicalmatcher.utils

MathFunctions() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.utils.MathFunctions

mean(double[]) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.MathFunctions

mergeConfig(LexicalEngineConfiguration) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

mustInterruptProcess() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunk

N

nameHuman - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

nextChunk() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

nextChunk() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ReferenceChunkSet

nextChunk() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.SingletonChunkSet

nextChunk() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunkSet

numberOfEntries - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

numberOfThreadsToUse - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

O

org.gcube.dataanalysis.lexicalmatcher.analysis.core - package org.gcube.dataanalysis.lexicalmatcher.analysis.core

org.gcube.dataanalysis.lexicalmatcher.analysis.examples - package org.gcube.dataanalysis.lexicalmatcher.analysis.examples

org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data - package org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces - package org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces

org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks - package org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks

org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph - package org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph

org.gcube.dataanalysis.lexicalmatcher.analysis.run - package org.gcube.dataanalysis.lexicalmatcher.analysis.run

org.gcube.dataanalysis.lexicalmatcher.analysis.test - package org.gcube.dataanalysis.lexicalmatcher.analysis.test

org.gcube.dataanalysis.lexicalmatcher.analysis.test.old - package org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

org.gcube.dataanalysis.lexicalmatcher.utils - package org.gcube.dataanalysis.lexicalmatcher.utils

P

populateRelationWithCategories() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

printStackTrace(Exception) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.LexicalLogger

R

randomTake - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

readXMLDoc(String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.FileTools

Reference - Interface in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces

ReferenceChunk - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks

ReferenceChunk(String, String, BigInteger, int, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ReferenceChunk

ReferenceChunkSet - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks

ReferenceChunkSet(int, int, String, String, LexicalEngineConfiguration, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ReferenceChunkSet

ReferenceChunkSet(int, int, String, String, BigInteger, LexicalEngineConfiguration, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ReferenceChunkSet

ReferenceChunksToTake - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

referenceColumn - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

referenceTable - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

refreshReferences() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

RelationEdge - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

RelationEdge(String, String, String) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

RelationEdge - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph

RelationEdge(String, long, long) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

relations - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

resetEngine(LexicalEngineConfiguration, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

resultString(String, String, String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

retrieveEntries(SessionFactory, String, BigInteger, int) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

retrieveTimeSeriesEntries(SessionFactory, String, String, BigInteger, int) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

rollback(Session) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.DatabaseFactory

runGuesser(String, String, LexicalEngineConfiguration) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

runGuesser(String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

runGuesser(String, String, LexicalEngineConfiguration, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

runGuesser(String, LexicalEngineConfiguration, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

runGuesser(String, String, LexicalEngineConfiguration, String, String, String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

RunMain() - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.StarGraphExtraction

S

saveObject(Object, SessionFactory) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.DatabaseFactory

saveString(String, String, boolean, String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.FileTools

saveString2File(String, String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.utils.FileTools

scoresTable - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.Engine

seriesColumn - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

seriesName - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

setCachePath(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setCategories(ArrayList<Category>) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setCategory(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

setCategoryDiscardDifferencialThreshold(float) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setCategoryDiscardThreshold(float) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setCategoryElements(BigInteger) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

setCategoryFrom(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

setCategoryFrom(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

setCategoryName(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ReferenceChunk

setCategoryTable(HashMap<String, Reference>) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryOrderedList

setCategoryTo(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

setCategoryTo(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

setChunkSize(int) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setChunkSize(int) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

setColumn(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

setConfigPath(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setCreateTable(Boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setCsquareCode(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setDatabaseAutomaticTestTable(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setDatabaseAutomaticTestTable(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setDatabaseDialect(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setDatabaseDialect(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setDatabaseDriver(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setDatabaseDriver(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setDatabaseIdleConnectionTestPeriod(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setDatabaseIdleConnectionTestPeriod(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setDatabasePassword(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setDatabasePassword(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setDatabaseURL(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setDatabaseURL(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setDatabaseUserName(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setDatabaseUserName(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setDescription(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setDescription(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

setDescription(String) - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

setDistributionTable(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setEdges(Object, Object) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedEdge

setEdgeWeight(E, double) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomListenableDirectedWeightedGraph

setEntryAcceptanceThreshold(float) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setFamilyID(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

setGeneralProperties(HashMap<String, String>) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setHcafTable(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setHspenTable(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setIdColumn(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setIndex(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

setIndex(String) - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

setMaximumElements(BigDecimal) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScoresOld

setMaxminLatTable(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setName(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

setName(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

setName(String) - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

setName(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

setNameHuman(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setNativeGeneration(Boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setNumberOfElements(BigInteger) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

setNumberOfElements(BigInteger) - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

setNumberOfEntries(BigInteger) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

setNumberOfThreads(Integer) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setNumberOfThreadsToUse(int) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setOccurrenceCellsTable(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

SetOfReferenceChunkSet - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks

SetOfReferenceChunkSet(ArrayList<Reference>, LexicalEngineConfiguration, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.SetOfReferenceChunkSet

setOrderedList(ArrayList<Reference>) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryOrderedList

setOriginHspenTable(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setRandomTake(boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setReferenceChunksToTake(int) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setReferenceColumn(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setReferenceTable(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setRemoteCalculator(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setRemoteEnvironment(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setScore(double) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

setSeriesColumn(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

setSeriesName(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.ChunkSet

setServiceUserName(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setSingleEntryRecognitionMaxDeviation(float) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setSpeciesID(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setTableName(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

setTablename(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

setTableName(String) - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

setTableStore(String) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setTimeSeriesChunksToTake(int) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setType2050(Boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setUseDB(Boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

setUseSimpleDistance(boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

setWeight(double) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedEdge

setWeigth(BigInteger) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

setWeigth(BigInteger) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

setWriteSummaryLog(Boolean) - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

showResults(ArrayList<SingleResult>) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

showScores() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.CategoryScores

shutdown() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.run.CategoryGuesser

singleEntryRecognitionMaxDeviation - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

SingleResult - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

SingleResult(String, String, double, String, String) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

SingletonChunkSet - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks

SingletonChunkSet(String, LexicalEngineConfiguration, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.SingletonChunkSet

StarGraphExtraction - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.run

StarGraphExtraction() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.run.StarGraphExtraction

start() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

T

TestExternalCfgProduction - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

TestExternalCfgProduction() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.TestExternalCfgProduction

TestExternalCfgProduction - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test

TestExternalCfgProduction() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.TestExternalCfgProduction

TestSingleExternalCfgProduction - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test.old

TestSingleExternalCfgProduction() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.old.TestSingleExternalCfgProduction

TestSingleExternalCfgProduction - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.test

TestSingleExternalCfgProduction() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.test.TestSingleExternalCfgProduction

TimeSeriesChunk - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks

TimeSeriesChunk(String, String, String, BigInteger, int, LexicalEngineConfiguration, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunk

TimeSeriesChunk(String, String, BigInteger, int, LexicalEngineConfiguration, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunk

TimeSeriesChunkSet - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks

TimeSeriesChunkSet(int, int, String, String, LexicalEngineConfiguration, Engine) - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.chunks.TimeSeriesChunkSet

TimeSeriesChunksToTake - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

toString() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Category

toString() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.Entry

toString() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.RelationEdge

toString() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.SingleResult

toString() - Method in interface org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.interfaces.Reference

toString() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedEdge

toString() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedVertex

toString() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge

totalCatElements - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

totalEntries - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

totalRelationElements - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.DBObjectTranslator

transform2Graph(DBObjectTranslator) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.TSObjectTransformer

transform2List(DBObjectTranslator, LexicalEngineConfiguration) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.TSObjectTransformer

transform2List(DBObjectTranslator, LexicalEngineConfiguration, String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.TSObjectTransformer

transformTypeFromDB(String) - Static method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.DataTypeRecognizer

TreeExtractor - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph

TreeExtractor() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.TreeExtractor

TSObjectTransformer - Class in org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data

TSObjectTransformer() - Constructor for class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.data.TSObjectTransformer

U

useDB() - Method in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.EngineConfiguration

useSimpleDistance - Variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.core.LexicalEngineConfiguration

W

WIDTH - Static variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

WIDTHBOX - Static variable in class org.gcube.dataanalysis.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer

A B C D E F G H I L M N O P R S T U W