C D E F G I J L N O P R S U

C

citation - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

ClassificationCapabilityImpl - Class in org.gcube.data.spd.ncbi.capabilities

ClassificationCapabilityImpl() - Constructor for class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

ConnectionPool - Class in org.gcube.data.spd.ncbi.connection

ConnectionPoolException - Exception in org.gcube.data.spd.ncbi.connection

ConnectionPoolException() - Constructor for exception org.gcube.data.spd.ncbi.connection.ConnectionPoolException

copy(String, String) - Method in class org.gcube.data.spd.ncbi.connection.ConnectionPool

Copy csv to table

createCitation() - Static method in class org.gcube.data.spd.ncbi.Utils

createCredits() - Static method in class org.gcube.data.spd.ncbi.Utils

createDate() - Static method in class org.gcube.data.spd.ncbi.Utils

CreateTable - Class in org.gcube.data.spd.ncbi

credits - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

D

dbDriver - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

dbUrl - Static variable in class org.gcube.data.spd.ncbi.connection.ConnectionPool

E

ExpansionCapabilityImpl - Class in org.gcube.data.spd.ncbi.capabilities

ExpansionCapabilityImpl() - Constructor for class org.gcube.data.spd.ncbi.capabilities.ExpansionCapabilityImpl

F

findTax(String) - Static method in class org.gcube.data.spd.ncbi.NcbiPlugin

G

getCitation(String) - Static method in class org.gcube.data.spd.ncbi.Utils

getClassificationInterface() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getCommonNames(String) - Static method in class org.gcube.data.spd.ncbi.Utils

getConnection() - Method in class org.gcube.data.spd.ncbi.connection.ConnectionPool

get a free connection or create a new one

getConnectionPool() - Static method in class org.gcube.data.spd.ncbi.connection.ConnectionPool

get connection pool

getDescription() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getExpansionInterface() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getListScientificNameID(String) - Static method in class org.gcube.data.spd.ncbi.Utils

getMappingInterface() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getOriginalId(String) - Static method in class org.gcube.data.spd.ncbi.Utils

getRelatedScientificNames(ObjectWriter<String>, String) - Method in class org.gcube.data.spd.ncbi.capabilities.NamesMappingImpl

getRepositoryInfo() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getRepositoryName() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getSupportedCapabilities() - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

getSupportedProperties() - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

getSynonymnsById(ObjectWriter<TaxonomyItem>, String) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

getSynonyms(ObjectWriter<String>, String) - Method in class org.gcube.data.spd.ncbi.capabilities.ExpansionCapabilityImpl

I

initialize(ServiceEndpoint) - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

insertPreStatement(String) - Static method in class org.gcube.data.spd.ncbi.connection.ConnectionPool

Insert

J

jdbc - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

L

lastupdate() - Static method in class org.gcube.data.spd.ncbi.Utils

get next update date

N

NamesMappingImpl - Class in org.gcube.data.spd.ncbi.capabilities

NamesMappingImpl() - Constructor for class org.gcube.data.spd.ncbi.capabilities.NamesMappingImpl

NcbiPlugin - Class in org.gcube.data.spd.ncbi

NcbiPlugin() - Constructor for class org.gcube.data.spd.ncbi.NcbiPlugin

nextUpdateDate(long) - Static method in class org.gcube.data.spd.ncbi.Utils

Convert long in date

O

org.gcube.data.spd.ncbi - package org.gcube.data.spd.ncbi

org.gcube.data.spd.ncbi.capabilities - package org.gcube.data.spd.ncbi.capabilities

org.gcube.data.spd.ncbi.connection - package org.gcube.data.spd.ncbi.connection

P

password - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

preStatement(String, ArrayList<String>, PreparedStatement) - Method in class org.gcube.data.spd.ncbi.connection.ConnectionPool

Update

R

releaseConnection(Connection) - Method in class org.gcube.data.spd.ncbi.connection.ConnectionPool

Release the connection and put it in the queue

retrieveTaxonById(String) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

retrieveTaxonByIds(Iterator<String>, ClosableWriter<TaxonomyItem>) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

retrieveTaxonChildrenByTaxonId(String) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

retriveCommonNames() - Method in class org.gcube.data.spd.ncbi.CreateTable

run() - Method in class org.gcube.data.spd.ncbi.CreateTable

S

searchByScientificName(String, ObjectWriter<TaxonomyItem>, Condition...) - Method in class org.gcube.data.spd.ncbi.capabilities.ClassificationCapabilityImpl

searchByScientificName(String, ObjectWriter<ResultItem>, Condition...) - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

selectPrestatement(String, ArrayList<String>, PreparedStatement) - Method in class org.gcube.data.spd.ncbi.connection.ConnectionPool

Select using preStatement

setAuthorship(String, String) - Static method in class org.gcube.data.spd.ncbi.Utils

sqlfile - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

SQLTableExists(String) - Static method in class org.gcube.data.spd.ncbi.Utils

Return true if a table exists

U

update(ServiceEndpoint) - Method in class org.gcube.data.spd.ncbi.NcbiPlugin

urlDump - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

username - Static variable in class org.gcube.data.spd.ncbi.NcbiPlugin

Utils - Class in org.gcube.data.spd.ncbi

Utils() - Constructor for class org.gcube.data.spd.ncbi.Utils

C D E F G I J L N O P R S U