org.gcube.data.spd.ncbi

Class NcbiPlugin

java.lang.Object

org.gcube.data.spd.plugin.fwk.AbstractPlugin

org.gcube.data.spd.ncbi.NcbiPlugin

All Implemented Interfaces:

org.gcube.data.spd.model.PropertySupport, org.gcube.data.spd.plugin.fwk.Searchable<org.gcube.data.spd.model.products.ResultItem>

public class NcbiPlugin
extends org.gcube.data.spd.plugin.fwk.AbstractPlugin

Field Summary

Fields

Modifier and Type	Field and Description
static String	citation
static String	credits
static String	dbDriver
static String	jdbc
static String	password
static String	sqlfile
static String	urlDump
static String	username

Constructor Summary

Constructors

Constructor and Description
NcbiPlugin()

Method Summary

Methods

Modifier and Type	Method and Description
static org.gcube.data.spd.model.products.Taxon	findTax(String id_record)
org.gcube.data.spd.plugin.fwk.capabilities.ClassificationCapability	getClassificationInterface()
String	getDescription()
org.gcube.data.spd.plugin.fwk.capabilities.ExpansionCapability	getExpansionInterface()
org.gcube.data.spd.plugin.fwk.capabilities.MappingCapability	getMappingInterface()
org.gcube.data.spd.model.RepositoryInfo	getRepositoryInfo()
String	getRepositoryName()
Set<org.gcube.data.spd.model.util.Capabilities>	getSupportedCapabilities()
void	initialize(org.gcube.common.resources.gcore.ServiceEndpoint res)
void	searchByScientificName(String word, org.gcube.data.spd.plugin.fwk.writers.ObjectWriter<org.gcube.data.spd.model.products.ResultItem> writer, org.gcube.data.spd.model.Condition... properties)
void	update(org.gcube.common.resources.gcore.ServiceEndpoint res)

Methods inherited from class org.gcube.data.spd.plugin.fwk.AbstractPlugin

equals, getHandledClass, getOccurrencesInterface, getSupportedProperties, getUnfoldInterface, hashCode, isInitialized, isRemote, isUseCache, setUseCache, shutdown, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

dbDriver

public static String dbDriver

sqlfile

public static String sqlfile

jdbc

public static String jdbc

username

public static String username

password

public static String password

urlDump

public static String urlDump

credits

public static final String credits

See Also:

Constant Field Values

citation

public static final String citation

See Also:

Constant Field Values

Constructor Detail

NcbiPlugin

public NcbiPlugin()

Method Detail

initialize

public void initialize(org.gcube.common.resources.gcore.ServiceEndpoint res)
                throws Exception

Overrides:

initialize in class org.gcube.data.spd.plugin.fwk.AbstractPlugin

Throws:

Exception

update

public void update(org.gcube.common.resources.gcore.ServiceEndpoint res)
            throws Exception

Overrides:

update in class org.gcube.data.spd.plugin.fwk.AbstractPlugin

Throws:

Exception

getDescription

public String getDescription()

Specified by:

getDescription in class org.gcube.data.spd.plugin.fwk.AbstractPlugin

getRepositoryName

public String getRepositoryName()

Specified by:

getRepositoryName in class org.gcube.data.spd.plugin.fwk.AbstractPlugin

getSupportedCapabilities

public Set<org.gcube.data.spd.model.util.Capabilities> getSupportedCapabilities()

Overrides:

getSupportedCapabilities in class org.gcube.data.spd.plugin.fwk.AbstractPlugin

getClassificationInterface

public org.gcube.data.spd.plugin.fwk.capabilities.ClassificationCapability getClassificationInterface()

Overrides:

getClassificationInterface in class org.gcube.data.spd.plugin.fwk.AbstractPlugin

getMappingInterface

public org.gcube.data.spd.plugin.fwk.capabilities.MappingCapability getMappingInterface()

Overrides:

getMappingInterface in class org.gcube.data.spd.plugin.fwk.AbstractPlugin

getExpansionInterface

public org.gcube.data.spd.plugin.fwk.capabilities.ExpansionCapability getExpansionInterface()

Overrides:

getExpansionInterface in class org.gcube.data.spd.plugin.fwk.AbstractPlugin

searchByScientificName

public void searchByScientificName(String word,
                          org.gcube.data.spd.plugin.fwk.writers.ObjectWriter<org.gcube.data.spd.model.products.ResultItem> writer,
                          org.gcube.data.spd.model.Condition... properties)

getRepositoryInfo

public org.gcube.data.spd.model.RepositoryInfo getRepositoryInfo()

Specified by:

getRepositoryInfo in class org.gcube.data.spd.plugin.fwk.AbstractPlugin

findTax

public static org.gcube.data.spd.model.products.Taxon findTax(String id_record)