density

Class Maxent

java.lang.Object

density.Maxent

public class Maxent
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
double	defaultPrevalence
String	environmentalLayersLocation
List<String>	envVariables
int	maxIterations
int	noDataValue
String	outputDirectory
String	samplesFilePath

Constructor Summary

Constructors

Constructor and Description
Maxent(String samplesFilePath, String environmentalLayersLocation, String outputDirectory, int maxIterations, double defaultPrevalence, int noDataValue)

Method Summary

Modifier and Type	Method and Description
void	clean()
void	executeMaxEnt()
double	getBestThr()
static density.Params	getDefaultParameters()
String	getOmissionPlot()
double	getPrevalence()
String	getResult()
String	getROCPlot()
String	getSpeciesName()
Map<String,String>	getVariablesContributions()
Map<String,String>	getVariablesPermutationsImportance()
String	getWarnings()
String	getWorldPlot()
static void	main(String[] args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

samplesFilePath

public String samplesFilePath

environmentalLayersLocation

public String environmentalLayersLocation

outputDirectory

public String outputDirectory

maxIterations

public int maxIterations

defaultPrevalence

public double defaultPrevalence

noDataValue

public int noDataValue

envVariables

public List<String> envVariables

Constructor Detail

Maxent

public Maxent(String samplesFilePath,
              String environmentalLayersLocation,
              String outputDirectory,
              int maxIterations,
              double defaultPrevalence,
              int noDataValue)

Method Detail

getDefaultParameters

public static density.Params getDefaultParameters()

executeMaxEnt

public void executeMaxEnt()

getSpeciesName

public String getSpeciesName()
                      throws Exception

Throws:

Exception

getResult

public String getResult()
                 throws Exception

Throws:

Exception

getWorldPlot

public String getWorldPlot()
                    throws Exception

Throws:

Exception

getOmissionPlot

public String getOmissionPlot()
                       throws Exception

Throws:

Exception

getROCPlot

public String getROCPlot()
                  throws Exception

Throws:

Exception

getVariablesContributions

public Map<String,String> getVariablesContributions()
                                             throws Exception

Throws:

Exception

getVariablesPermutationsImportance

public Map<String,String> getVariablesPermutationsImportance()
                                                      throws Exception

Throws:

Exception

getPrevalence

public double getPrevalence()
                     throws Exception

Throws:

Exception

getBestThr

public double getBestThr()
                  throws Exception

Throws:

Exception

getWarnings

public String getWarnings()

clean

public void clean()
           throws Exception

Throws:

Exception

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception