org.gcube.dataanalysis.executor.rscripts

Class KnitrCompiler

java.lang.Object

org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalInfraAlgorithm

org.gcube.dataanalysis.executor.rscripts.generic.GenericRScript

org.gcube.dataanalysis.executor.rscripts.KnitrCompiler

All Implemented Interfaces:

org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent, org.gcube.dataanalysis.ecoengine.interfaces.Transducerer

public class KnitrCompiler
extends GenericRScript

Field Summary

Fields inherited from class org.gcube.dataanalysis.executor.rscripts.generic.GenericRScript

environmentalvariables, inputvariables, mainScriptName, output, outputValues, outputvariables, packageURL

Fields inherited from class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

config, inputs, outputParameters, resourceManager, status

Constructor Summary

Constructors

Constructor and Description
KnitrCompiler()

Method Summary

Methods

Modifier and Type	Method and Description
String	getDescription()
org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType	getOutput()
protected void	initVariables()
protected void	setInputParameters()

Methods inherited from class org.gcube.dataanalysis.executor.rscripts.generic.GenericRScript

analyseContent, generateRemoteLogFile, init, process, saveLogFile, shutdown

Methods inherited from class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalInfraAlgorithm

sendNotification

Methods inherited from class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

addBooleanInput, addDoubleInput, addEnumerateInput, addFileInput, addIntegerInput, addOutputString, addRemoteDatabaseInput, addStringInput, compute, getInfrastructure, getInputParameter, getInputParameters, getResourceLoad, getResources, getStatus, log, setConfiguration

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

KnitrCompiler

public KnitrCompiler()

Method Detail

getDescription

public String getDescription()

Specified by:

getDescription in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

Specified by:

getDescription in class org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm

initVariables

protected void initVariables()

Overrides:

initVariables in class GenericRScript

setInputParameters

protected void setInputParameters()

Overrides:

setInputParameters in class GenericRScript

getOutput

public org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType getOutput()

Specified by:

getOutput in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

Overrides:

getOutput in class GenericRScript