org.gcube.application.enm.service.plugins.comps
Class COMPSsClient

java.lang.Object
  org.gcube.application.enm.service.plugins.comps.COMPSsClient

public class COMPSsClient
extends Object

COMPSs client for the execution of openModeller experiments.

Author:

Roger Rafanell

Constructor Summary

COMPSsClient(String endpoint)
Instantiates a new OModeller client.

Method Summary

int	getCompletness(com.bsc.venusbes.venusclient.credentials.BESCredential besCred, String[] jobIds)
List<com.bsc.venusbes.venusclient.types.JobProgress>	getJobsProgress(com.bsc.venusbes.venusclient.credentials.BESCredential besCred, String[] jobIds) Retrieves the progress of concrete jobs.
List<com.bsc.venusbes.venusclient.types.JobStatus>	OModellerStatus(com.bsc.venusbes.venusclient.credentials.BESCredential besCred, String[] jobIds) Retrieves the status of a list of submitted jobs.
String	submitModel(com.bsc.venusbes.venusclient.credentials.BESCredential besCred, com.bsc.venusbes.venusclient.credentials.StorageCredential cred, Integer wallClockTime, String VMImage, Double diskSize, Integer cores, Double memory, Integer minOfVMs, Integer maxOfVMs, String jobName, String appLocation, String logsDir, String requests, String testPoints, String outputs) Submit a OModeller Job to the COMPSs enactment service.
List<String>	terminateOModeller(com.bsc.venusbes.venusclient.credentials.BESCredential besCred, String[] jobIds) Terminate a list of submitted jobs.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

COMPSsClient

public COMPSsClient(String endpoint)

Instantiates a new OModeller client.

Parameters:

endpoint - The endpoint of the COMPSs enactment service.

tempDir - the temp dir

Method Detail

submitModel

public String submitModel(com.bsc.venusbes.venusclient.credentials.BESCredential besCred,
                          com.bsc.venusbes.venusclient.credentials.StorageCredential cred,
                          Integer wallClockTime,
                          String VMImage,
                          Double diskSize,
                          Integer cores,
                          Double memory,
                          Integer minOfVMs,
                          Integer maxOfVMs,
                          String jobName,
                          String appLocation,
                          String logsDir,
                          String requests,
                          String testPoints,
                          String outputs)

Submit a OModeller Job to the COMPSs enactment service.

Parameters:

besCred - the BES credential.

cred - the FTP Storage credential.

appLocation - the CDMI URI of the application.

diskSize - Set the size of the needed disk size in GB.

minOfVMs - the minimum number of VMs allowed in the execution.

maxOfVMs - the maximum number of VMs allowed in the execution.

inputSequence - Path of the sequence file in the storage (relative to the user home).

dataBase - Path of the database file in the storage (relative to the user home).

numFragments - Number of sequence fragments.

outputFile - Path of the OModeller output in the storage (relative to the user home).

commandArgs - Command line arguments for blastall binary.

Returns:

A string containing the JobID of the execution.

OModellerStatus

public List<com.bsc.venusbes.venusclient.types.JobStatus> OModellerStatus(com.bsc.venusbes.venusclient.credentials.BESCredential besCred,
                                                                          String[] jobIds)

Retrieves the status of a list of submitted jobs.

Parameters:

besCred - the BES credential.

jobIds - Array of job IDs. One job is supported in this version.

Returns:

Array of ActivityStatus containing the status of the job.

getJobsProgress

public List<com.bsc.venusbes.venusclient.types.JobProgress> getJobsProgress(com.bsc.venusbes.venusclient.credentials.BESCredential besCred,
                                                                            String[] jobIds)

Retrieves the progress of concrete jobs.

Parameters:

besCred - the BES credential.

jobIds - The IDs of the retrieved jobs.

Returns:

List of JobProgress objects of each job.

terminateOModeller

public List<String> terminateOModeller(com.bsc.venusbes.venusclient.credentials.BESCredential besCred,
                                       String[] jobIds)

Terminate a list of submitted jobs.

Parameters:

besCred - the BES credential.

jobIds - Array of job IDs

getCompletness

public int getCompletness(com.bsc.venusbes.venusclient.credentials.BESCredential besCred,
                          String[] jobIds)