A B C D E F G I L N O P R S T U W Y

A

add(Tree) - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Adds a tree to the store.

add(Stream<Tree>) - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Adds many trees at once to the store.

add(Tree) - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Adds a tree to the store.

add(Stream<Tree>) - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Adds many trees at once to the store.

B

bind(Element) - Method in class org.gcube.data.speciesplugin.SpeciesBinder

binder() - Method in class org.gcube.data.speciesplugin.SpeciesPlugin

C

calculateInitialRefreshDelay() - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

call - Variable in class org.gcube.data.speciesplugin.utils.SpeciesService

cardinality() - Method in class org.gcube.data.speciesplugin.SpeciesSource

cardinality() - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Returns the cardinality of the store.

cardinality() - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Returns the cardinality of the store.

classificationCall - Variable in class org.gcube.data.speciesplugin.utils.SpeciesService

cloneTree(Tree, String) - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

createCollection(List<String>, List<String>) - Method in class org.gcube.data.speciesplugin.utils.SpeciesService

Entry point

createCollection(List<String>, List<String>, boolean) - Method in class org.gcube.data.speciesplugin.utils.SpeciesService

Create collection with trees

createQuery(List<String>, List<String>) - Method in class org.gcube.data.speciesplugin.utils.SpeciesService

Creates a Species Discovery query using SPQL 2.0

createTempDirectory() - Static method in class org.gcube.data.speciesplugin.Utils

D

datasources - Variable in class org.gcube.data.speciesplugin.SpeciesLifecycle

db - Static variable in class org.gcube.data.speciesplugin.SpeciesLifecycle

delete() - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Deletes a store, stopping it if it has been started.

delete() - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Deletes a store, stopping it if it has been started.

description() - Method in class org.gcube.data.speciesplugin.SpeciesPlugin

DirDeleter - Class in org.gcube.data.speciesplugin.utils

DirDeleter(File) - Constructor for class org.gcube.data.speciesplugin.utils.DirDeleter

directory - Variable in class org.gcube.data.speciesplugin.utils.DirDeleter

E

executor - Static variable in class org.gcube.data.speciesplugin.utils.SpeciesUpdateScheduler

F

fromStoreToService(Tree) - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

G

GENERATOR - Static variable in class org.gcube.data.speciesplugin.utils.SpeciesService

get(String, Pattern) - Method in class org.gcube.data.speciesplugin.SpeciesReader

get(Pattern) - Method in class org.gcube.data.speciesplugin.SpeciesReader

get(String, Pattern) - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Returns a tree in the store with a given identifier, after pruning it with a given pattern.

get(Pattern) - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Returns all the trees in the store which match a given pattern, after pruning them with it.

get(String, Pattern) - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Returns a tree in the store with a given identifier, after pruning it with a given pattern.

get(Pattern) - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Returns all the trees in the store which match a given pattern, after pruning them with it.

getInstance() - Static method in class org.gcube.data.speciesplugin.utils.SpeciesUpdateScheduler

getSourceIdFiller() - Method in class org.gcube.data.speciesplugin.SpeciesReader

I

id() - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Returns the store identifier.

id() - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Returns the store identifier.

init() - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

isAnchored() - Method in class org.gcube.data.speciesplugin.SpeciesPlugin

L

lastUpdate - Variable in class org.gcube.data.speciesplugin.SpeciesLifecycle

loadCollection() - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

location() - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Returns the location of the store.

location() - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Returns the location of the store.

lock - Variable in class org.gcube.data.speciesplugin.SpeciesSource

logger - Static variable in class org.gcube.data.speciesplugin.utils.SpeciesTreeGenerator

N

name() - Method in class org.gcube.data.speciesplugin.SpeciesPlugin

neoStore - Variable in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

newDatabase(File) - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoDBProvider

O

org.gcube.data.speciesplugin - package org.gcube.data.speciesplugin

org.gcube.data.speciesplugin.store - package org.gcube.data.speciesplugin.store

org.gcube.data.speciesplugin.utils - package org.gcube.data.speciesplugin.utils

P

POOL_SIZE - Static variable in class org.gcube.data.speciesplugin.utils.SpeciesUpdateScheduler

properties() - Method in class org.gcube.data.speciesplugin.SpeciesPlugin

properties - Variable in class org.gcube.data.speciesplugin.SpeciesSource

properties() - Method in class org.gcube.data.speciesplugin.SpeciesSource

R

readLock - Variable in class org.gcube.data.speciesplugin.SpeciesSource

reconfigure(Element) - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

refreshCollection() - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

REQUEST_SAMPLE - Static variable in class org.gcube.data.speciesplugin.SpeciesPlugin

requestSchemas() - Method in class org.gcube.data.speciesplugin.SpeciesPlugin

rescheduleRefresh() - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

run() - Method in class org.gcube.data.speciesplugin.utils.DirDeleter

S

scheduled - Variable in class org.gcube.data.speciesplugin.SpeciesLifecycle

scheduleRefresh() - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

scientificNames - Variable in class org.gcube.data.speciesplugin.SpeciesLifecycle

sourceId - Variable in class org.gcube.data.speciesplugin.utils.SourceIdFiller

sourceIdFiller - Variable in class org.gcube.data.speciesplugin.SpeciesReader

SourceIdFiller - Class in org.gcube.data.speciesplugin.utils

SourceIdFiller(String) - Constructor for class org.gcube.data.speciesplugin.utils.SourceIdFiller

SPECIES_SERVICE_ID - Static variable in class org.gcube.data.speciesplugin.utils.SpeciesService

SpeciesBinder - Class in org.gcube.data.speciesplugin

SpeciesBinder() - Constructor for class org.gcube.data.speciesplugin.SpeciesBinder

SpeciesLifecycle - Class in org.gcube.data.speciesplugin

SpeciesLifecycle(SpeciesSource, List<String>, List<String>, boolean, long, TimeUnit) - Constructor for class org.gcube.data.speciesplugin.SpeciesLifecycle

Creates an instance for a given SpeciesSource

SpeciesNeoDBProvider - Class in org.gcube.data.speciesplugin.store

SpeciesNeoDBProvider() - Constructor for class org.gcube.data.speciesplugin.store.SpeciesNeoDBProvider

SpeciesNeoStore - Class in org.gcube.data.speciesplugin.store

SpeciesNeoStore(String) - Constructor for class org.gcube.data.speciesplugin.store.SpeciesNeoStore

SpeciesPlugin - Class in org.gcube.data.speciesplugin

SpeciesPlugin() - Constructor for class org.gcube.data.speciesplugin.SpeciesPlugin

SpeciesReader - Class in org.gcube.data.speciesplugin

SpeciesReader(SpeciesSource) - Constructor for class org.gcube.data.speciesplugin.SpeciesReader

Creates an instance for a SpeciesSource

SpeciesService - Class in org.gcube.data.speciesplugin.utils

SpeciesService(SpeciesStore) - Constructor for class org.gcube.data.speciesplugin.utils.SpeciesService

SpeciesSource - Class in org.gcube.data.speciesplugin

SpeciesSource(String, SpeciesStore, List<Property>) - Constructor for class org.gcube.data.speciesplugin.SpeciesSource

Creates an instance with a given identifier.

SpeciesStore - Interface in org.gcube.data.speciesplugin.store

SpeciesTreeGenerator - Class in org.gcube.data.speciesplugin.utils

Generates trees from taxonomy items.

SpeciesTreeGenerator() - Constructor for class org.gcube.data.speciesplugin.utils.SpeciesTreeGenerator

SpeciesUpdateScheduler - Class in org.gcube.data.speciesplugin.utils

SpeciesUpdateScheduler() - Constructor for class org.gcube.data.speciesplugin.utils.SpeciesUpdateScheduler

start(Environment) - Method in class org.gcube.data.speciesplugin.SpeciesPlugin

start(File) - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Starts the store in a given storage location,

start(File) - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Starts the store in a given storage location,

stop() - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

stop(Environment) - Method in class org.gcube.data.speciesplugin.SpeciesPlugin

stop() - Method in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

Stops a started store.

stop() - Method in interface org.gcube.data.speciesplugin.store.SpeciesStore

Stops a started store.

STORAGE_LOCATION - Static variable in class org.gcube.data.speciesplugin.SpeciesLifecycle

The storage location.

store() - Method in class org.gcube.data.speciesplugin.SpeciesSource

Returns the underlying tree store

store - Variable in class org.gcube.data.speciesplugin.utils.SpeciesService

store(TaxonomyItem) - Method in class org.gcube.data.speciesplugin.utils.SpeciesService

Save each tree in store

STORE_ID - Static variable in class org.gcube.data.speciesplugin.store.SpeciesNeoStore

strictMatch - Variable in class org.gcube.data.speciesplugin.SpeciesLifecycle

switchStore(File) - Method in class org.gcube.data.speciesplugin.SpeciesSource

T

terminate() - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

timeUnit - Variable in class org.gcube.data.speciesplugin.SpeciesLifecycle

toSchema(Class<?>) - Static method in class org.gcube.data.speciesplugin.Utils

toString() - Method in class org.gcube.data.speciesplugin.SpeciesSource

treeCounter - Variable in class org.gcube.data.speciesplugin.utils.SpeciesService

types() - Method in class org.gcube.data.speciesplugin.SpeciesSource

U

unscheduleRefresh() - Method in class org.gcube.data.speciesplugin.SpeciesLifecycle

updatePeriod - Variable in class org.gcube.data.speciesplugin.SpeciesLifecycle

Utils - Class in org.gcube.data.speciesplugin

Utils() - Constructor for class org.gcube.data.speciesplugin.Utils

W

writeLock - Variable in class org.gcube.data.speciesplugin.SpeciesSource

Y

yield(Tree) - Method in class org.gcube.data.speciesplugin.utils.SourceIdFiller

yield(TaxonomyItem) - Method in class org.gcube.data.speciesplugin.utils.SpeciesTreeGenerator

A B C D E F G I L N O P R S T U W Y