org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping

Class AbstractEcologicalEngineMapper

java.lang.Object

org.n52.wps.server.AbstractDescriptorAlgorithm

org.n52.wps.server.AbstractAnnotatedAlgorithm

org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping.AbstractEcologicalEngineMapper

All Implemented Interfaces:

org.n52.wps.server.IAlgorithm, org.n52.wps.server.observerpattern.ISubject

Direct Known Subclasses:

ABSENCE_CELLS_FROM_AQUAMAPS, BIONYM, BIONYM_LOCAL, CMSY, CSQUARE_COLUMN_CREATOR, DBSCAN, DISCREPANCY_ANALYSIS, FAO_OCEAN_AREA_COLUMN_CREATOR, FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, GENERIC_CHARTS, GEO_CHART, HCAF_FILTER, HRS, ICCAT_VPA, KMEANS, LOF, MAPS_COMPARISON, MAX_ENT_NICHE_MODELLING, OBIS_MOST_OBSERVED_SPECIES, OBIS_MOST_OBSERVED_TAXA, OBIS_SINGLE_SPECIES_DISTRIBUTION_PER_AREA, OBIS_SPECIES_OBSERVATIONS_PER_LME_AREA, OBIS_SPECIES_OBSERVATIONS_PER_MEOW_AREA, OBIS_SPECIES_OBSERVATIONS_PER_YEAR, OBIS_TAXA_OBSERVATIONS_PER_YEAR, OCCURRENCE_ENRICHMENT, PRESENCE_CELLS_GENERATION, QUALITY_ANALYSIS, RASTER_DATA_PUBLISHER, SGVM_INTERPOLATION, SUBMITQUERY, TIME_GEO_CHART, TIME_SERIES_ANALYSIS, TIME_SERIES_CHARTS, TIMEEXTRACTION, TIMEEXTRACTION_TABLE, XMEANS, XYEXTRACTOR, XYEXTRACTOR_TABLE, ZEXTRACTION, ZEXTRACTION_TABLE

public class AbstractEcologicalEngineMapper
extends org.n52.wps.server.AbstractAnnotatedAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.n52.wps.server.AbstractAnnotatedAlgorithm

org.n52.wps.server.AbstractAnnotatedAlgorithm.Proxy

Field Summary

Fields

Modifier and Type	Field and Description
org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration	config
static HashMap<String,DatabaseInfo>	databaseParametersMemoryCache
InfrastructureDialoguer	infrastructureDialoguer
LinkedHashMap<String,Object>	inputs Deploying procedure: 1 - modify configuration files 2 - modify resource file: resources/templates/setup.cfg 3 - generate classes with ClassGenerator 4 - add new classes in the wps_config.xml on the wps web app config folder 5 - produce the Jar file of this project 6 - copy the jar file in the lib folder of the wps web app change the server parameters in the wps_config.xml file
LinkedHashMap<String,Object>	outputs
static HashMap<String,String>	runningcomputations
LinkedHashMap<String,Long>	times

Constructor Summary

Constructors

Constructor and Description
AbstractEcologicalEngineMapper()

Method Summary

Methods

Modifier and Type	Method and Description
static void	addComputation(String session, String user)
static void	addDatabaseInfo(String scope, DatabaseInfo info)
void	deleteGeneratedFiles(List<File> generatedFiles)
void	deleteTemporaryTables(List<String> generatedInputTables)
static String	displayRunningComputations()
org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent	getComputationalAgent(String algorithmName)
static DatabaseInfo	getDatabaseInfo(String scope)
List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType>	getInputParameters(String algorithmName)
org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType	getOutput(String algorithmName)
static int	getRuningComputations()
void	manageUserToken()
static void	removeComputation(String session)
void	run()
void	waitForResources()

Methods inherited from class org.n52.wps.server.AbstractAnnotatedAlgorithm

createAlgorithmDescriptor, getAlgorithmClass, getAlgorithmInstance, run

Methods inherited from class org.n52.wps.server.AbstractDescriptorAlgorithm

addError, addObserver, getAlgorithmDescriptor, getDescription, getErrors, getInputDataType, getOutputDataType, getState, getWellKnownName, notifyObservers, processDescriptionIsValid, removeObserver, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

inputs

public LinkedHashMap<String,Object> inputs

Deploying procedure: 1 - modify configuration files 2 - modify resource file: resources/templates/setup.cfg 3 - generate classes with ClassGenerator 4 - add new classes in the wps_config.xml on the wps web app config folder 5 - produce the Jar file of this project 6 - copy the jar file in the lib folder of the wps web app change the server parameters in the wps_config.xml file

outputs

public LinkedHashMap<String,Object> outputs

times

public LinkedHashMap<String,Long> times

databaseParametersMemoryCache

public static HashMap<String,DatabaseInfo> databaseParametersMemoryCache

runningcomputations

public static HashMap<String,String> runningcomputations

config

public org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config

infrastructureDialoguer

public InfrastructureDialoguer infrastructureDialoguer

Constructor Detail

AbstractEcologicalEngineMapper

public AbstractEcologicalEngineMapper()

Method Detail

addComputation

public static void addComputation(String session,
                  String user)

removeComputation

public static void removeComputation(String session)

getRuningComputations

public static int getRuningComputations()

displayRunningComputations

public static String displayRunningComputations()

waitForResources

public void waitForResources()
                      throws Exception

Throws:

Exception

getDatabaseInfo

public static DatabaseInfo getDatabaseInfo(String scope)

addDatabaseInfo

public static void addDatabaseInfo(String scope,
                   DatabaseInfo info)

getComputationalAgent

public org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent getComputationalAgent(String algorithmName)
                                                                                     throws Exception

Throws:

Exception

getInputParameters

public List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType> getInputParameters(String algorithmName)
                                                                                    throws Exception

Throws:

Exception

getOutput

public org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType getOutput(String algorithmName)
                                                                     throws Exception

Throws:

Exception

deleteTemporaryTables

public void deleteTemporaryTables(List<String> generatedInputTables)
                           throws Exception

Throws:

Exception

deleteGeneratedFiles

public void deleteGeneratedFiles(List<File> generatedFiles)
                          throws Exception

Throws:

Exception

manageUserToken

public void manageUserToken()

run

public void run()
         throws Exception

Throws:

Exception